GSoC Week 5
This week, I mainly focused on diagnosing why adding KEGG still failed to yield finer-grained SBO classifications across 108 models, extending the EC lookup pipeline, and experimenting with additional data sources. Here’s the complete summary of the work update during the week. Root-Cause Investigation Added adviaecnumber() helper to attempt refinement via EC number –driven mapping. Re-ran the enhanced pipeline on 108 models ，reactions that remained in generic SBO classes were still missing EC numbers . Result: no additional reactions could be refined to more specific SBO classes. Conclusion: the main blocker is not the mapping rule itself but the absence of EC numbers for those reactions across the currently consulted sources. New Data Sources Added SEED adapter : uses the Solr query interface with strict null filtering to avoid spurious entries. Reactome adapter : combines web parsing with the QuickGO API to perform a multi-step conversion...