GSoC Week 6
To address the time issue , I introduced two key optimizations into the annotation pipeline : Early termination : as soon as a precise SBO term is obtained for the current reaction, stop querying further databases to avoid unnecessary requests. EC number truncation : truncate from the first non-digit character to enforce consistent EC formatting and reduce matching noise. I then re-ran the full evaluation on 108 models . Core Optimizations Early Termination Goal : within the adapter chain , once a non-generic SBO (i.e., not SBO:0000176 ) is found, immediately stop querying other data sources to reduce I/O and network wait . Effect : significantly lowers total query volume and shortens overall wall time . Results Across the 108 models , 3,317 reactions were converted from the generic SBO:0000176 to more specific SBO categories. Per-model average processing time : 432.99 seconds/model (≈ 7.22 minutes/model ). Compared with the previous sequentia...