Hi, As discussed in the last blog, I started working on my first milestone of fetching SBO table from OLS to SBO annotator. This blog contains a summary of the meeting with the new features I added and the issues I worked on and fixed this week to add SBML L3V2 support. So, let's quickly dive in summary: 1. Change Detection Mechanism for SBO Terms ❓ Issue : OLS API’s updated field changed, but no observable differences in content. ✅ Observation : Compared OLS (API) and GitHub .owl versions – content is identical . Latest update timestamp on OLS is 2025, but GitHub file was last modified in 2023. New terms are already included in the GitHub version. ✅ Decision : We can rely on GitHub .owl file for consistency and reduced request time. 2. Fetching ‘is_a’ / Parent Info Performance Issue ⏱️ Fetching subclass_of (parent info) via OLS takes ~10 minutes. ⚡ Other fields can be fetched in <1 minute. ✅ Optimization : Parent info should be pulled from ...
Comments
Post a Comment